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companies announced yesterday that they would jointly undertake
a project that could make the sequencing of the human genome
look easy by comparison. They will spend up to half a billion
dollars to identify all the proteins in the human body and all
the interactions between those proteins.
The announcement, made by Myriad Genetics Inc., Hitachi Ltd.
and the Oracle Corporation, is the latest sign that the
biotechnology industry's love affair with genomics - the study
of genes - is giving way to proteomics, the study of proteins.
Genes are the instructions for making proteins. But proteins
actually carry out the body's functions and are thus of more
direct medical interest.
``The human proteome has become the next frontier of modern
biology,'' said Peter Meldrum, president and chief executive of
Myriad, a biotechnology company in Salt Lake City that is
leading the venture. The proteome is a term referring to all the
proteins in an organism, much as the genome refers to an
organism's complete set of DNA, containing all the genes.
Even as Myriad and its partners were making their
announcement, a group of mainly academic scientists calling
itself the Human Proteome Organization was meeting in McLean,
Va., to discuss ideas for a Human Proteome Project to find
proteins in as comprehensive a way as the Human Genome Project
did genes. But there was no consensus on what to do, several
participants said.
Myriad and its partners are not waiting, saying they would
map the entire human proteome in three years. The companies said
they would compile a database of this protein information and
make it available for a fee to drug companies and, for reduced
rates, to academic researchers.
But many competitors and academic experts said that they were
skeptical that anyone could create a complete proteome map,
saying the proteome is too vast and that it is unclear what the
term ``entire human proteome'' even means.
``There's no way they can come close to it,'' said Donny
Strosberg, president of Hybrigenics, a French company that is
also mapping the interactions among proteins. ``Anybody who
knows what he's talking about would not mention something like
that.''
Others questioned whether the companies could recover their
costs selling database subscriptions. Investors have soured to
some degree on companies that offer databases, preferring those
that directly develop drugs. The Celera Genomics Group, which
sequenced the entire genome, is not trying that for the proteome,
looking instead only for proteins involved in disease. ``We
don't think there's much value in a general survey of
proteins,'' said J. Craig Venter, the Celera president.
Interest in proteomics got a lift in February when scientists
from the Human Genome Project and from Celera reported that
there were only about 30,000 human genes, far fewer than once
thought. Instead of one gene making one protein, as was often
assumed, it appears that one gene can make several proteins and
that the complexity of human beings might be explained by this
plethora of proteins.
But studying proteins is a far more daunting task than
studying DNA. There are many more of them than genes, perhaps
hundreds of thousands to several million. And proteins undergo
numerous changes after they are made.
Moreover, the genome is more well defined. It consists of
three billion chemical units and, for a given individual, is
pretty much the same in all cells. But there are different
proteins in different types of cells, in sick versus healthy
cells, and even at different stages of life.
For that reason, many experts say it does not make sense to
have a proteome project like the genome project, or to claim to
completely map the human proteome. ``When you sequence the
genome you know you're done,'' said Ruedi Aebersold, a
proteomics expert at the Institute for Systems Biology in
Seattle. ``In the case of proteins, it's much less clear what
the endpoint is.''
Nevertheless, many companies, like Large Scale Biologycoei,
Geneva Proteomicscoei and Cytogencoei, are pursuing some aspects
of proteomics. Some are cataloging all proteins in different
types of cells. Others are looking at protein interactions.
Myriad executives said their plan was more ambitious than any
other. Still, they said, they are not trying to find every
protein in every type of cell. The venture will concentrate
mainly on protein interactions and will look only at 10 to 12
major cell types out of the hundreds that exist in the body,
they said. By studying such interactions, they said, it will be
possible to determine all the metabolic pathways in the body,
which would be of interest to drug companies seeking to
understand the causes of disease.
To carry out the protein project, the companies are forming a
venture called Myriad Proteomics, which will be half owned by
Myriad Genetics, 28 percent by Hitachi, and 4 percent by Oracle,
Mr. Meldrum said. The remaining 18 percent would be owned by
Friedli Corporate Finance, a Swiss investment group that is a
major shareholder in Myriad Genetics. Myriad Genetics is
contributing technology valued at $82 million to the venture.
The other three companies are investing a total of $85 million
in cash and $18 million in software and services from Oracle, he
said.
But Mr. Meldrum said the total job would cost $300 million to
$500 million, so additional money would have to be raised,
possibly through a public offering.
Myriad, which is best known for its genetic test of
susceptibility to breast cancer, is already selling proteomic
services to drug companies
For Oracle, which is making its first investment in
biotechnology, the project will provide a chance to show off its
database software. Many computer companies are now focusing on
the life sciences business, because, with the advent of genomics,
biologists have become voracious users of computers. Hitachi, a
Japanese electronics giant that has set up a life sciences
division, will supply computer equipment and some
instrumentation and automation to Myriad Proteomics.